Academic Thesis

Basic information

Name Udaka Hiroko
Belonging department
Occupation name
researchmap researcher code 7000009528
researchmap agency Okayama University of Science

Title

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Bibliography Type

 

Author

Heath A. MacMillan
Jose M. Knee
Alice B. Dennis
Hiroko Udaka
Katie E. Marshall
Thomas J.S. Merritt
Brent J. Sinclair

Summary

Cold tolerance is a key determinant of insect distribution and abundance, and thermal acclimation can strongly influence organismal stress tolerance phenotypes, particularly in small ectotherms like Drosophila. However, there is limited understanding of the molecular and biochemical mechanisms that confer such impressive plasticity. Here, we use high-throughput mRNA sequencing (RNA-seq) and liquid chromatography - mass spectrometry (LC-MS) to compare the transcriptomes and metabolomes of D. melanogaster acclimated as adults to warm (rearing) (21.5 °C) or cold conditions (6 °C). Cold acclimation improved cold tolerance and led to extensive biological reorganization: almost one third of the transcriptome and nearly half of the metabolome were differentially regulated. There was overlap in the metabolic pathways identified via transcriptomics and metabolomics, with proline and glutathione metabolism being the most strongly-supported metabolic pathways associated with increased cold tolerance. We discuss several new targets in the study of insect cold tolerance (e.g. dopamine signaling and Na+ -driven transport), but many previously identified candidate genes and pathways (e.g. heat shock proteins, Ca2+ signaling, and ROS detoxification) were also identified in the present study, and our results are thus consistent with and extend the current understanding of the mechanisms of insect chilling tolerance.

Magazine(name)

Scientific Reports

Publisher

 

Volume

6

Number Of Pages

 

StartingPage

 

EndingPage

 

Date of Issue

2016-06-30

Referee

Exist

Invited

 

Language

 

Thesis Type

Research papers (academic journals)

ISSN

 

DOI

10.1038/srep28999

NAID

 

PMID

 

J-GLOBAL ID

 

arXiv ID

 

ORCID Put Code

 

DBLP ID