Academic Thesis

Basic information

Name Tsunedomi Ryouichi
Belonging department
Occupation name
researchmap researcher code 1000361639
researchmap agency Okayama University of Science

Title

Optimized protocol for the extraction of RNA and DNA from frozen whole blood sample stored in a single EDTA tube

Bibliography Type

 

Author

Hirotaka Yamagata
Ayumi Kobayashi
Ryouichi Tsunedomi
Tomoe Seki
Masaaki Kobayashi
Kosuke Hagiwara
Chong Chen
Shusaku Uchida
Go Okada
Manabu Fuchikami
Toshiharu Kamishikiryo
Jun-ichi Iga
Shusuke Numata
Makoto Kinoshita
Takahiro A. Kato
Ryota Hashimoto
Hiroaki Nagano
Yasumasa Okamoto
Shuichi Ueno
Tetsuro Ohmori
Shin Nakagawa

Summary

AbstractCryopreservation of whole blood is useful for DNA collection, and clinical and basic research. Blood samples in ethylenediaminetetraacetic acid disodium salt (EDTA) tubes stored at − 80 °C are suitable for DNA extraction, but not for high-quality RNA extraction. Herein, a new methodology for high-quality RNA extraction from human blood samples is described. Quickly thawing frozen whole blood on aluminum blocks at room temperature could minimize RNA degradation, and improve RNA yield and quality compared with thawing the samples in a 37 °C water bath. Furthermore, the use of the NucleoSpin RNA kit increased RNA yield by fivefold compared with the PAXgene Blood RNA Kit. Thawing blood samples on aluminum blocks significantly increased the DNA yield by ~ 20% compared with thawing in a 37 °C water bath or on ice. Moreover, by thawing on aluminum blocks and using the NucleoSpin RNA and QIAamp DNA Blood kits, the extraction of RNA and DNA of sufficient quality and quantity was achieved from frozen EDTA whole blood samples that were stored for up to 8.5 years. Thus, extracting RNA from frozen whole blood in EDTA tubes after long-term storage is feasible. These findings may help advance gene expression analysis, as well as biomarker research for various diseases.

Magazine(name)

Scientific Reports

Publisher

Springer Science and Business Media LLC

Volume

11

Number Of Pages

1

StartingPage

17075

EndingPage

17075

Date of Issue

2021-08

Referee

Exist

Invited

Not exist

Language

 

Thesis Type

Research papers (academic journals)

ISSN

 

DOI

10.1038/s41598-021-96567-2

NAID

 

PMID

 

J-GLOBAL ID

 

arXiv ID

 

ORCID Put Code

 

DBLP ID