Academic Thesis

Basic information

Name Yagi Yoichiro
Belonging department
Occupation name
researchmap researcher code 1000229028
researchmap agency Okayama University of Science

Title

FMO calculations on complexes of metalloprotein and organic compounds: II

Bibliography Type

Sole Author

Author

Yoichiro YAGI

Summary

It is known that tyrosinase is an enzyme responsible for melanin production and has two zinc ions (or copper ions) in its active site. In recent years, we have performed an FMO calculation with FMO2-MP2/6-31G revel for tyrosinase-tyrosine complex to obtain detailed knowledge on the enzymatic reaction mechanism of tyrosinase. We found that the FMO calculation converged and is somewhat valid even for metal-containing systems (at least for the tyrosinase complex). In this paper, we carried out an FMO calculation raising the computational revel to FMO2-MP2/6-31G* and computed the inter-fragment interaction energies (IFIEs) among tyrosine, zinc ions, water molecule, and the amino acid residues in tyrosinase. The FMO computations show that two zinc ions that bind strongly to tyrosinase hold tyrosine and a water molecule in the active site of tyrosinase. It is consider that a water molecule between two zinc ions involves the oxidation reaction of tyrosine. We found that the two zinc ions and a water molecule play an essential role in reaction process.

Magazine(name)

The Bulletin of Institute of Frontier Science and Technology

Publisher

岡山理科大学 フロンティア理工学研究所

Volume

Number Of Pages

5号

StartingPage

21

EndingPage

25

Date of Issue

2023/12

Referee

Not exist

Invited

Not exist

Language

Japanese

Thesis Type

Research papers (publications of university or research institution)

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DOI

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PMID

URL

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arXiv ID

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